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Gluten-Free Chocolate Cupcakes

Published: Jun 23, 2016 Modified: Jan 15, 2021 by Alison Andrews This post may contain affiliate links

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Gluten-Free Chocolate Cupcakes

Perfectly moist gluten-free chocolate cupcakes with a rich chocolate buttercream frosting. So good you’ll never know they’re gluten-free and vegan!

Gluten-free chocolate cupcakes on a wire cooling rack.

You know, when I finally cracked the code to gluten-free baking and managed a spectacular gluten-free chocolate cake, I was so damn happy about it.

I mean no one wants to eat a cake that tastes like it’s not quite as good as the original. You want it to just taste like delicious cake.

Same thing for vegan cake of course, you just want it to taste like cake. Not vegan cake.

Well, these gluten-free chocolate cupcakes are naturally also vegan – I say naturally because, have you seen the name of this blog? But really if you feed them to your non-vegan gluten-eating friends they will have no idea.

These are just fabulously delicious cupcakes. No one would be the wiser unless you told them. No one will know they’re gluten-free. Or vegan for that matter. They’re just like the best cupcakes you’ve ever had. That’s all.

The texture of these cupcakes, oh my, the texture. So perfectly moist and delicious. And so rich and chocolatey.

And really they’re a cinch to make too.

I have a mother and sister who are gluten-free so if they’re coming over for any sort of special occasion, these cupcakes, or the gluten-free chocolate cakeĀ recipe that they’re based on, are making an appearance!

Gluten-free chocolate cupcakes topped with chocolate frosting and sprinkles on a wire cooling rack.

How To Make Gluten Free Chocolate Cupcakes

You will find full instructions and measurements in the recipe card at the bottom of the post. This is a summary of the process to go along with the process photos.

  • Sift gluten free all purpose flour andĀ cocoa powderĀ into a mixing bowl.
  • Add light brown sugar, baking soda and salt and mix together.
  • Prepare yourĀ flax eggĀ by mixing 1 Tbsp ground flaxseeds with 3 Tbsp hot water and allowing to sit for a minute.
  • Add the flax egg, soy milk,Ā vanilla extract,Ā oil, applesauce and vinegar and mix into a batter.
  • Use a hand whisk to get rid of any large lumps (very small ones are fine).
  • Divide the batter evenly between 12 cupcake liners.
  • Place into the oven to bake for 22-25 minutes or until a toothpick inserted into the center of a cupcake comes out clean.
Step by step process photos of making gluten-free chocolate cupcakes

Recipe Tips

Check the expiry date. Always check the expiry date on your gluten-free all purpose flour mix! Gluten-free flours tend to have a shorter shelf life than regular gluten flours, and on one particular occasion, I didn’t check the expiry date on mine and made my mother a gluten-free birthday cake.

I then proceeded to question ALL my baking skills when it tasted awful! Only to find out that my flour had expired (at least it made me feel good again about my baking skills!).

So check the dates on your flour, especially if you don’t bake super often, it’s likely you need to get a fresh supply.

Use a gluten free all purpose flour blend. It has to be a blend that is designed to replace regular all purpose flour in baking.

Chocolate cupcakes topped with chocolate frosting and sprinkles on a wire cooling rack.

Storing and Freezing

Keep your cupcakes stored in an airtight container at room temperature for 2-3 days. You can also store them in the fridge in an airtight container for up to 5 days.

They are also freezer friendly if you’d like to freeze them. They can be frozen either frosted or unfrosted.

Chocolate cupcakes on a wire cooling rack.

More Gluten Free Baking Recipes

  1. Vegan Gluten Free Carrot Cake
  2. Gluten Free Carrot Cake Cupcakes
  3. Vegan Gluten Free Chocolate Cake
  4. Vegan Gluten Free Chocolate Chip Cookies
  5. Vegan Gluten Free Brownies
Chocolate cupcake cut in half to show the center.

Did you make this recipe? Be sure to leave a comment and rating below!

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Gluten free chocolate cupcakes

Gluten-Free Chocolate Cupcakes


★★★★★

4.7 from 18 reviews

  • Author: Alison Andrews
  • Prep Time: 20 mins
  • Cook Time: 25 mins
  • Total Time: 45 mins
  • Yield: 12
  • Diet: Vegan
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Description

Perfectly moist gluten-free chocolate cupcakes with a rich chocolate buttercream frosting. So good you’ll never know they’re gluten-free and vegan!


Ingredients

For the cupcakes:

  • 1 and 1/2 cups (204g) Gluten Free All Purpose Flour Blend*
  • 1/2 cup (42g) Cocoa Powder (Unsweetened)
  • 1 cup (200g) Light Brown Sugar
  • 1 and 1/4 tsp Baking Soda
  • 1/2 tsp Salt
  • 1 cup (240ml) Soy Milk (or other non-dairy milk)
  • 2 tspĀ Vanilla Extract
  • 1/2 cup (120ml) Canola Oil*
  • 2 Tbsp Applesauce
  • 1 Tbsp (15ml) White Vinegar or Apple Cider Vinegar
  • 1 Flax Egg (1 Tbsp Ground Flaxseed Meal + 3 Tbsp Hot Water)

For the Frosting:

  • 3 cups (360g) Powdered Sugar
  • 1/2 cup (42g) Cocoa Powder (Unsweetened)
  • 1/3 cup (75g) Vegan Butter
  • 2 tsp Vanilla Extract
  • 4 Tbsp + 1/2 tsp Soy Milk (or other non-dairy milk)

Instructions

  1. Preheat the oven to 350°F (180°C).
  2. Sift the flour and cocoa powder into a mixing bowl.
  3. Add the brown sugar, baking soda and salt and mix together.
  4. Prepare your flax egg by mixing 1 Tbsp ground flaxseeds with 3 Tbsp hot water and allowing to sit for a minute.
  5. Add the flax egg, soy milk, vanilla extract,Ā  oil, applesauce and vinegar and mix in.
  6. Use a hand whisk to get rid of any large lumps (very small ones are fine).
  7. Prepare your cupcake tray by setting cupcake liners into place.
  8. Move the batter to a jug that allows for easy pouring and evenly divide the batter between the 12 cupcake liners.
  9. Place into the oven to bake for 22-25 minutes or until a toothpick inserted into the center of a cupcake comes out clean.
  10. While the cupcakes are baking, prepare your frosting by adding all the ingredients to a mixing bowl and mixing with an electric mixer, starting on low speed and then increasing speed gradually until smooth and creamy. Don’t add all the non-dairy milk at once, gradually add it in, you might not need all of it. If your frosting ends up too thin, add more powdered sugar, if it’s too thick, add more non dairy milk a drop at a time until it reaches the right consistency.
  11. As soon as your cupcakes are cooked, move them to a cooling rack to cool completely before frosting.

Notes

*I used Bob’s Red Mill All Purpose Baking Flour but I have tested this recipe with other gluten-free all purpose blends and they have all been perfect. Some blends have had xantham gum in them and some have not, and I have not found a difference in the outcome. As long as it is an all purpose baking blend, it should work well for this recipe.

*You can use a different vegetable oil if you prefer.

*Adapted from our Gluten-Free Chocolate Cake.

  • Category: Dessert, Gluten-Free
  • Method: Bake
  • Cuisine: Vegan

Nutrition

  • Serving Size: 1 Cupcake (of 12)
  • Calories: 378
  • Sugar: 46.5g
  • Sodium: 285mg
  • Fat: 14.6g
  • Saturated Fat: 3.4g
  • Carbohydrates: 62.8g
  • Fiber: 4g
  • Protein: 3.8g

Keywords: gluten free chocolate cupcakes

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About the Author

Hi I'm Alison Andrews, I'm the voice and cook behind Loving It Vegan. I love making delicious vegan food and creating vegan versions of all your old favorites, so that you’ll never feel like you’re missing out. Find out more about me here.

Loving It Vegan is a participant in the Amazon Services LLC Associates Program, an affiliate advertising program designed to provide a means for sites to earn advertising fees by advertising and linking to Amazon.com. This site may contain some of these links to Amazon.com. If you make a purchase through one of those links, Loving It Vegan will receive a small commission from the purchase at no additional cost to you.
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Reader Interactions

Comments

  1. Leora says

    October 21, 2020 at 7:05 pm

    Delicious, moist and good texture for a gluten free dessert! Highly recommend.

    ★★★★★

    Reply
    • Alison Andrews says

      October 22, 2020 at 9:20 am

      Thanks Leora!

      Reply
  2. Jorien G Bowens says

    August 09, 2020 at 3:48 am

    The texture of these was amazing. I also like that the cupcakes were not overly sweet since the frosting has a good amount of sugar in it.

    ★★★★★

    Reply
    • Alison Andrews says

      August 11, 2020 at 10:03 am

      Awesome! So glad you enjoyed them Jorien!

      Reply
  3. Carolyn says

    June 29, 2020 at 9:25 pm

    Yummy. I did trade out half of the milk for strong coffee as I do with all chocolate cake recipes I make. The texture and flavour were great. Definitely a keeper. Thanks for the recipe!

    ★★★★★

    Reply
  4. Katelyn says

    December 16, 2019 at 11:21 pm

    Hi!! I’m making this as there is one gluten free person to accommodate for and I was just wondering if you knew how I could scale it down a bit as 12 is too many? Thanks so much!

    Reply
    • Alison Andrews says

      December 17, 2019 at 9:42 am

      Hi Katelyn, you could probably halve the recipe (just be very careful with the calculations) and make 6 cupcakes instead of the full batch. All the best! šŸ™‚

      Reply
  5. Silvia says

    November 12, 2019 at 11:05 pm

    Made this yesterday – only substitution was 1 regular large egg instead of the flax egg. They turned out beautifully. Nice slight dome. Had batter for 13-14…
    I would like to boost the chocolate flavor. What would you recommend? I thought of cutting the milk in half and adding half of the liquid as espresso. Or should I cut some flour and up the cocoa?? Thank you for sharing this recipe!! I love that it all comes together in one bowl and is ā€œlow techā€!

    ★★★★

    Reply
    • Alison Andrews says

      November 13, 2019 at 10:15 am

      Hi Silvia, so glad they turned out well! I think adding some of the liquid as espresso would work great! Half milk, half strongly brewed coffee or espresso. All the best! šŸ™‚

      Reply
  6. Mike D says

    October 22, 2019 at 8:22 am

    Hi Alison

    Looking to use this recipe and was wondering what the apple sauce brings to the mixture and can it be substituted with anything?

    Cheers

    Mike

    Reply
    • Alison Andrews says

      October 22, 2019 at 11:15 am

      Hi Mike, it’s for extra moisture, so you can use extra oil instead. šŸ™‚

      Reply
      • Mike D says

        October 22, 2019 at 11:29 am

        Thank you, and sorry would it be a 1:1 ratio as in an extra 2 tbsp of oil instead of apple sauce, or is this just one to experiment with.

        Reply
        • Alison Andrews says

          October 22, 2019 at 11:30 am

          Same ratio, so 2 extra tbsp of oil would be perfect! šŸ™‚

        • Mike D says

          October 22, 2019 at 11:32 am

          Thank you so very much, looking forward to trying these šŸ™‚

  7. shauna says

    August 02, 2019 at 1:33 am

    hello
    can i omit the flax egg?

    Reply
    • Alison Andrews says

      August 02, 2019 at 1:24 pm

      Hi Shauna, you can’t omit it unless you’re replacing it with something else.

      Reply
      • Stephanie says

        September 30, 2019 at 10:14 pm

        Can it be replaced by more applesauce?

        Reply
        • Alison Andrews says

          October 01, 2019 at 8:57 am

          Hi Stephanie, yes sure! If using applesauce to replace it then I would use 3 Tbsp applesauce to replace 1 flax egg. šŸ™‚

    • Dale says

      October 08, 2020 at 4:01 am

      These came out really dry for me! I was so disappointed!! Do you have any idea what I could have done wrong??

      Reply
      • Alison Andrews says

        October 08, 2020 at 9:56 am

        Most likely you used too much flour. Flour should either be weighed on a food scale or measured using the spoon and level method. Spoon it into your measuring cup and then level off the top with a knife. Don’t scoop it and don’t pack it into the cup. Hope that helps!

        Reply
  8. Hanneke de wit says

    May 27, 2019 at 5:33 am

    Can I put them in the freezer? After baking. And if I can then for how many weeks?

    ★★★★

    Reply
    • Alison Andrews says

      May 28, 2019 at 9:50 am

      Yes you can freeze them for up to 3 months. This article has some tips on freezing your cupcakes. All the best! šŸ™‚

      Reply
  9. Meryl says

    March 18, 2019 at 4:21 pm

    I was really nervous about making a vegan gluten free cupcake (vegan baking is especially out of my comfort zone, and when combined with GF it’s even more nerve-wracking!). This came out really great! I ended up making two batches because I wasn’t paying enough attention and assumed it was a 24 cupcake recipe. Whoops! The first batch I whisked a bit with a stand mixer and then also let sit for longer before baking. The second I hand whisked and pretty much poured straight into the tin. The first batch came out a little more dense and didn’t rise as much (which makes sense). They were a little “prettier” though in that they did not crack on the top.

    I’m really pleased that these cupcakes weren’t crumbly at all and the texture was great!. I did make one modification by letting my flax egg sit and get a little more sticky in the fridge for about ten minutes. It still seemed too runny after 1 minute.

    Someone mentioned they’d prefer a more chocolatey flavor. I used guittard cocoa rouge for the cupcakes (which should be a brighter, less mellow chocolate) and a dutch processed cocoa (tastes like oreos) for the frosting. I may try to push the chocolate factor in a future run of this recipe by trying other cocoa powders or subbing out some of the soy milk for some coffee.

    ★★★★★

    Reply
    • Alison Andrews says

      March 19, 2019 at 9:55 am

      So glad you enjoyed them! Thanks so much for sharing and the great review! šŸ™‚

      Reply
  10. Monica says

    March 04, 2019 at 5:04 pm

    These were so delicious, however, mine came out a little dry and crumbled a lot when I barely picked it up. Any ideas what I did wrong? Otherwise, they were SOO good! Thanks for the recipe!

    Reply
    • Alison Andrews says

      March 05, 2019 at 11:03 am

      Hi Monica, I would guess you might have used a little too much flour, that would cause the dryness. If you weigh it, you should have a better result with that. As far as crumbling goes though, I’m not sure what would cause that. If you used a gluten-free all purpose flour blend, as opposed to a single type of flour, it should hold together.

      Reply
  11. Elaine says

    February 17, 2019 at 3:35 am

    Great texture and crumb, but these had a milder flavor than I anticipated. I’d have preferred a deeper chocolate flavor. I needed vanilla as the icing so I just used my own recipe for the icing so I can’t vouch for that. This came out with 14 cupcakes rather than 12 for me. I’ll keep this recipe handy for future use!

    ★★★★

    Reply
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Hi I’m Alison Andrews! I love making delicious vegan food and creating delicious vegan versions of all your old favorite dishes, so you can have your vegan cake and eat it too!

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